STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
menGUbiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). (239 aa)    
Predicted Functional Partners:
menA
menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
 
  
 0.943
AHY47294.1
NAD(P)Hquinone oxidoreductase, type IV; TIGRFAM:TIGR01755:Flavoprotein WrbA; COG:COG0655: Multimeric flavodoxin WrbA [General function prediction only]; Pfam:PF03358:NADPH-dependent FMN reductase; ProSiteProfiles:PS50902:Flavodoxin/nitric oxide synthase; SUPERFAMILY:SSF52218:No Description; flav_wrbA; Belongs to the WrbA family.
     
  0.900
AHY47033.1
COG:COG0142: Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Pfam:PF00348:Polyprenyl synthetase; Pfam:PF00348:Polyprenyl synthetase; ProSitePatterns:PS00444:Polyprenyl synthetase; SUPERFAMILY:SSF48576:Terpenoid synthase; Belongs to the FPP/GGPP synthase family.
 
  
 0.873
AHY47035.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
hemL
hemL: glutamate-1-semialdehyde-2,1-aminomutase; TIGRFAM:TIGR00713:Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; COG:COG0001: Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]; Pfam:PF00202:Aminotransferase class-III; Hamap:MF_00375:Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; PIRSF:PIRSF000521:No Description; ProSitePatterns:PS00600:Aminotransferase class-III; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase;KEGG: 00860; MetaCyc: PWY-5188; UniPathway: UPA00251.
       0.773
AHY46129.1
Methyltransferase domain; COG:COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Pfam:PF08241:Methyltransferase type 11; SUPERFAMILY:SSF53335:No Description.
  
     0.709
AHY47032.1
Tetratricopeptide repeat; COG:COG4235: Cytochrome c biogenesis factor [Posttranslational modification protein turnover chaperones]; Pfam:PF13428:Tetratricopeptide repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
     
 0.624
AHY46556.1
COG:COG0438: Glycosyltransferase [Cell envelope biogenesis outer membrane]; Pfam:PF00534:Glycosyl transferase, family 1; Pfam:PF00534:Glycosyl transferase, family 1; SUPERFAMILY:SSF53756:No Description.
      0.623
AHY47037.1
COG:COG0113: Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]; Pfam:PF00490:Porphobilinogen synthase; Pfam:PF00490:Porphobilinogen synthase; PIRSF:PIRSF001415:Porphobilinogen synthase; PRINTS:PR00144:Porphobilinogen synthase; ProSitePatterns:PS00169:Porphobilinogen synthase; SMART:SM01004:Porphobilinogen synthase; SUPERFAMILY:SSF51569:No Description; Belongs to the ALAD family.
     
 0.552
tatC
tatC: twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
 
     0.469
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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