STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
selAselA: L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (486 aa)    
Predicted Functional Partners:
AHY46299.1
TIGRFAM:TIGR00476:Selenide water dikinase; COG:COG0709: Selenophosphate synthase [Amino acid transport and metabolism]; Pfam:PF02769:AIR synthase-related protein, C-terminal domain; SUPERFAMILY:SSF56042:AIR synthase-related protein, C-terminal domain;KEGG: 00450; MetaCyc: PWY-6281.
 
  
 0.990
AHY47043.1
TIGRFAM:TIGR00475:Translation elongation factor, selenocysteine-specific; COG:COG3276: Selenocysteine-specific translation elongation factor [Translation ribosomal structure and biogenesis]; Pfam:PF00009:Elongation factor, GTP-binding domain; PRINTS:PR00315:Elongation factor, GTP-binding domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
 0.982
serS
serS: serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.921
AHY47854.1
Molybdopterin oxidoreductase; COG:COG3383: Uncharacterized anaerobic dehydrogenase [General function prediction only]; Pfam:PF00384:Molybdopterin oxidoreductase; SUPERFAMILY:SSF53706:No Description; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.732
AHY47324.1
Pfam:PF07355:Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase.
  
   
 0.704
AHY47275.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
   
 0.673
AHY47855.1
Molybdopterin oxidoreductase Fe4S4 domain; COG:COG3383: Uncharacterized anaerobic dehydrogenase [General function prediction only]; Pfam:PF04879:Molybdopterin oxidoreductase, 4Fe-4S domain; SMART:SM00926:Molybdopterin oxidoreductase, 4Fe-4S domain; SUPERFAMILY:SSF53706:No Description.
 
   
 0.643
AHY47852.1
4Fe-4S dicluster domain; COG:COG0437: Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]; Pfam:PF13247:4Fe-4S ferredoxin-type, iron-sulpur binding domain; PIRSF:PIRSF036298:Formate dehydrogenase, iron-sulphur subunit; ProSitePatterns:PS00198:4Fe-4S ferredoxin, iron-sulphur binding, conserved site; ProSiteProfiles:PS51379:4Fe-4S ferredoxin-type, iron-sulpur binding domain; SUPERFAMILY:SSF54862:No Description.
 
   
 0.638
AHY47045.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.541
AHY47038.1
TIGRFAM:TIGR01469:Uroporphyrin-III C-methyltransferase; COG:COG0007: Uroporphyrinogen-III methylase [Coenzyme metabolism]; Pfam:PF02602:Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; ProSitePatterns:PS00840:Uroporphiryn-III C-methyltransferase, conserved site; SUPERFAMILY:SSF53790:Tetrapyrrole methylase;KEGG: 00860; MetaCyc: PWY-5194; MetaCyc: PWY-5196; UniPathway: UPA00148; UniPathway: UPA00148; UniPathway: UPA00262; UniPathway: UPA00262; UniPathway: UPA00262; cobA_cysG_Cterm.
  
    0.520
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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