STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47046.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (115 aa)    
Predicted Functional Partners:
AHY47047.1
TIGRFAM:TIGR03883:Conserved hypothetical protein CHP03883, F420 biosynthesis associated; COG:COG5282: Uncharacterized conserved protein [Function unknown]; Pfam:PF10103:Protein of unknown function DUF2342; SUPERFAMILY:SSF55486:No Description.
       0.773
AHY47048.1
mttA/Hcf106 family; COG:COG1826: Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]; Pfam:PF02416:Sec-independent protein translocase protein TatA/B/E; PRINTS:PR01506:Twin-arginine translocation protein TatB-like.
       0.410
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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