STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47054.1COG:COG1472: Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Pfam:PF00933:Glycoside hydrolase, family 3, N-terminal; Pfam:PF00933:Glycoside hydrolase, family 3, N-terminal; PRINTS:PR00133:Glycoside hydrolase, family 3, N-terminal; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily. (415 aa)    
Predicted Functional Partners:
AHY47502.1
TIGRFAM:TIGR00221:N-acetylglucosamine-6-phosphate deacetylase; COG:COG1820: N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]; Pfam:PF13147:Amidohydrolase; PIRSF:PIRSF038994:N-acetylglucosamine-6-phosphate deacetylase; SUPERFAMILY:SSF51556:No Description;KEGG: 00052; KEGG: 00520; MetaCyc: PWY-6517.
 
  
 0.645
AHY46048.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
  
 0.561
AHY47055.1
COG:COG1061: DNA or RNA helicases of superfamily II [Transcription / DNA replication recombination and repair]; Pfam:PF00271:Helicase, C-terminal; Pfam:PF00271:Helicase, C-terminal; ProSiteProfiles:PS51194:Helicase, C-terminal; SMART:SM00487:Helicase, superfamily 1/2, ATP-binding domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.536
AHY47056.1
Hypothetical protein; COG:COG3372: Uncharacterized conserved protein [Function unknown]; Pfam:PF05626:Protein of unknown function DUF790, endonuclease-like; Pfam:PF05626:Protein of unknown function DUF790, endonuclease-like.
       0.536
AHY47057.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.536
AHY47053.1
COG:COG3839: ABC-type sugar transport systems ATPase components [Carbohydrate transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; Belongs to the ABC transporter superfamily.
     
 0.486
AHY47050.1
COG:COG0395: ABC-type sugar transport system permease component [Carbohydrate transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
  
  
 0.478
AHY46716.1
TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family; TIGRFAM:TIGR00089:Methylthiotransferase; COG:COG0621: 2-methylthioadenine synthetase [Translation ribosomal structure and biogenesis]; Pfam:PF04055:Radical SAM; ProSitePatterns:PS01278:Methylthiotransferase, conserved site; ProSiteProfiles:PS50926:TRAM domain; SMART:SM00729:Elongator protein 3/MiaB/NifB; SUPERFAMILY:SSF102114:No Description;KEGG: 00231; KEGG: 00540.
 
      0.421
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.