STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47056.1Hypothetical protein; COG:COG3372: Uncharacterized conserved protein [Function unknown]; Pfam:PF05626:Protein of unknown function DUF790, endonuclease-like; Pfam:PF05626:Protein of unknown function DUF790, endonuclease-like. (429 aa)    
Predicted Functional Partners:
AHY47055.1
COG:COG1061: DNA or RNA helicases of superfamily II [Transcription / DNA replication recombination and repair]; Pfam:PF00271:Helicase, C-terminal; Pfam:PF00271:Helicase, C-terminal; ProSiteProfiles:PS51194:Helicase, C-terminal; SMART:SM00487:Helicase, superfamily 1/2, ATP-binding domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 
 
 0.993
AHY47057.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY47054.1
COG:COG1472: Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Pfam:PF00933:Glycoside hydrolase, family 3, N-terminal; Pfam:PF00933:Glycoside hydrolase, family 3, N-terminal; PRINTS:PR00133:Glycoside hydrolase, family 3, N-terminal; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily.
       0.536
AHY46142.1
Prepilin-type N-terminal cleavage/methylation domain; TIGRFAM:TIGR02532:Prokaryotic N-terminal methylation site; COG:COG4970: Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF07963:Prokaryotic N-terminal methylation site; ProSitePatterns:PS00409:Prokaryotic N-terminal methylation site; SUPERFAMILY:SSF54523:No Description; IV_pilin_GFxxxE.
  
     0.438
AHY45994.1
FAD binding domain; COG:COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]; Pfam:PF01494:Monooxygenase, FAD-binding; PRINTS:PR00420:Aromatic-ring hydroxylase-like; SUPERFAMILY:SSF51905:No Description.
  
     0.418
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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