STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47073.1Type I phosphodiesterase / nucleotide pyrophosphatase; COG:COG1524: Uncharacterized proteins of the AP superfamily [General function prediction only]; Pfam:PF01663:Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SUPERFAMILY:SSF53649:Alkaline-phosphatase-like, core domain. (522 aa)    
Predicted Functional Partners:
AHY47072.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY45572.1
COG:COG1290: Cytochrome b subunit of the bc complex [Energy production and conversion]; Pfam:PF00032:Cytochrome b/b6, C-terminal; ProSiteProfiles:PS51003:Cytochrome b/b6, C-terminal; SUPERFAMILY:SSF81648:Cytochrome b/b6, C-terminal.
  
     0.726
uvrC
uvrC: excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.682
AHY45570.1
Rieske [2Fe-2S] domain; COG:COG0723: Rieske Fe-S protein [Energy production and conversion]; Pfam:PF00355:Rieske [2Fe-2S] iron-sulphur domain; PRINTS:PR00162:Rieske iron-sulphur protein, C-terminal; ProSiteProfiles:PS51296:Rieske [2Fe-2S] iron-sulphur domain; SUPERFAMILY:SSF50022:Rieske [2Fe-2S] iron-sulphur domain.
 
     0.661
AHY47013.1
O-Antigen ligase; COG:COG3063: Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF04932:O-antigen ligase-related; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
  
     0.633
AHY46311.1
COG:COG2406: Protein distantly related to bacterial ferritins [General function prediction only]; Pfam:PF00210:Ferritin/DPS protein domain; Pfam:PF00210:Ferritin/DPS protein domain; SUPERFAMILY:SSF47240:Ferritin-like superfamily; Belongs to the Dps family.
  
     0.618
AHY47074.1
COG:COG0531: Amino acid transporters [Amino acid transport and metabolism]; Pfam:PF13520:Amino acid permease; Pfam:PF13520:Amino acid permease; PIRSF:PIRSF006060:Amino acid/polyamine transporter I.
 
 
   0.610
AHY46270.1
COG:COG0438: Glycosyltransferase [Cell envelope biogenesis outer membrane]; Pfam:PF13579:Glycosyl transferase 4-like domain; SUPERFAMILY:SSF53756:No Description.
  
   
 0.559
AHY45777.1
COG:COG2244: Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Pfam:PF01943:Polysaccharide biosynthesis protein; Pfam:PF01943:Polysaccharide biosynthesis protein.
 
     0.513
AHY47141.1
COG:COG0473: Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]; Pfam:PF00180:Isopropylmalate dehydrogenase-like domain; Pfam:PF00180:Isopropylmalate dehydrogenase-like domain; SUPERFAMILY:SSF53659:No Description.
  
    0.507
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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