STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47074.1COG:COG0531: Amino acid transporters [Amino acid transport and metabolism]; Pfam:PF13520:Amino acid permease; Pfam:PF13520:Amino acid permease; PIRSF:PIRSF006060:Amino acid/polyamine transporter I. (499 aa)    
Predicted Functional Partners:
AHY47073.1
Type I phosphodiesterase / nucleotide pyrophosphatase; COG:COG1524: Uncharacterized proteins of the AP superfamily [General function prediction only]; Pfam:PF01663:Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SUPERFAMILY:SSF53649:Alkaline-phosphatase-like, core domain.
 
 
   0.610
AHY47072.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.547
glgE
Protein of unknown function (DUF3416); Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.499
AHY45475.1
TIGRFAM:TIGR02456:Trehalose synthase/alpha-amylase, N-terminal; COG:COG0366: Glycosidases [Carbohydrate transport and metabolism]; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; SMART:SM00642:Glycosyl hydrolase, family 13, subfamily, catalytic domain; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily;KEGG: 00500; MetaCyc: PWY-2622; treS_nterm.
   
 0.499
AHY45481.1
Glycosidase; COG:COG0366: Glycosidases [Carbohydrate transport and metabolism]; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; SMART:SM00642:Glycosyl hydrolase, family 13, subfamily, catalytic domain; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily.
   
 0.499
AHY46369.1
Alpha amylase, catalytic domain; COG:COG0366: Glycosidases [Carbohydrate transport and metabolism]; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; SMART:SM00642:Glycosyl hydrolase, family 13, subfamily, catalytic domain; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily.
   
 0.499
uvrC
uvrC: excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.499
AHY47112.1
Glycosidase; COG:COG0366: Glycosidases [Carbohydrate transport and metabolism]; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; SMART:SM00642:Glycosyl hydrolase, family 13, subfamily, catalytic domain; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily.
   
 0.499
AHY46506.1
COG:COG0077: Prephenate dehydratase [Amino acid transport and metabolism]; Pfam:PF00800:Prephenate dehydratase; Pfam:PF00800:Prephenate dehydratase; PIRSF:PIRSF001500:Bifunctional P-protein, chorismate mutase/prephenate dehydratase; ProSiteProfiles:PS51168:Chorismate mutase; SMART:SM00830:Chorismate mutase; SUPERFAMILY:SSF53850:No Description.
   
 
 0.401
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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