STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47078.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (33 aa)    
Predicted Functional Partners:
AHY47079.1
PucR C-terminal helix-turn-helix domain; COG:COG2508: Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF13556:PucR C-terminal helix-turn-helix domain; ProSiteProfiles:PS50887:GGDEF domain.
       0.773
AHY47080.1
TIGRFAM:TIGR00836:Ammonium transporter; COG:COG0004: Ammonia permease [Inorganic ion transport and metabolism]; Pfam:PF00909:Ammonium transporter AmtB-like domain; PRINTS:PR00342:Blood group Rhesus C/E/D polypeptide; ProSitePatterns:PS01219:Ammonium transporter, conserved site; SUPERFAMILY:SSF111352:Ammonium transporter AmtB-like domain.
       0.433
uvrA
Uvra: excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.425
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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