STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47094.1COG:COG0559: Branched-chain amino acid ABC-type transport system permease components [Amino acid transport and metabolism]; Pfam:PF02653:ABC transporter, permease; Pfam:PF02653:ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family. (363 aa)    
Predicted Functional Partners:
AHY47092.1
COG:COG0411: ABC-type branched-chain amino acid transport systems ATPase component [Amino acid transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 0.999
AHY47093.1
COG:COG4177: ABC-type branched-chain amino acid transport system permease component [Amino acid transport and metabolism]; Pfam:PF02653:ABC transporter, permease; Pfam:PF02653:ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
AHY47091.1
COG:COG0410: ABC-type branched-chain amino acid transport systems ATPase component [Amino acid transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 0.997
AHY47095.1
COG:COG0683: ABC-type branched-chain amino acid transport systems periplasmic component [Amino acid transport and metabolism]; Pfam:PF13458:Periplasmic binding protein; Pfam:PF13458:Periplasmic binding protein; SUPERFAMILY:SSF53822:No Description.
 
 
 0.997
AHY46961.1
COG:COG0410: ABC-type branched-chain amino acid transport systems ATPase component [Amino acid transport and metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 0.988
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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