STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47110.1COG:COG5578: Predicted integral membrane protein [Function unknown]; Pfam:PF04854:Protein of unknown function DUF624; Pfam:PF04854:Protein of unknown function DUF624. (213 aa)    
Predicted Functional Partners:
AHY47109.1
Bacterial extracellular solute-binding protein; COG:COG1653: ABC-type sugar transport system periplasmic component [Carbohydrate transport and metabolism]; Pfam:PF01547:Bacterial extracellular solute-binding, family 1; ProSiteProfiles:PS51318:Twin-arginine translocation pathway, signal sequence; SUPERFAMILY:SSF53850:No Description.
 
    0.720
AHY47106.1
COG:COG1486: Alpha-galactosidases/6-phospho-beta-glucosidases family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]; Pfam:PF02056:Glycoside hydrolase, family 4; Pfam:PF02056:Glycoside hydrolase, family 4; PRINTS:PR00732:Glycoside hydrolase, family 4; SUPERFAMILY:SSF56327:Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal.
 
     0.582
AHY47111.1
COG:COG2207: AraC-type DNA-binding domain-containing proteins [Transcription]; Pfam:PF12833:DNA binding HTH domain, AraC-type; ProSiteProfiles:PS01124:DNA binding HTH domain, AraC-type; SMART:SM00342:DNA binding HTH domain, AraC-type; SUPERFAMILY:SSF46689:Homeodomain-like.
  
    0.542
AHY47108.1
COG:COG1175: ABC-type sugar transport systems permease components [Carbohydrate transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
 
  
 0.507
AHY45636.1
PRD domain; COG:COG3711: Transcriptional antiterminator [Transcription]; Pfam:PF00874:PRD; ProSiteProfiles:PS51372:PRD; SUPERFAMILY:SSF63520:PRD.
  
    0.475
AHY47107.1
COG:COG0395: ABC-type sugar transport system permease component [Carbohydrate transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
  
  
 0.463
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.