STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47115.1Putative epimerase PhzC/PhzF like protein; COG:COG0384: Predicted epimerase PhzC/PhzF homolog [General function prediction only]; Pfam:PF02567:Phenazine biosynthesis PhzF protein; Pfam:PF02567:Phenazine biosynthesis PhzF protein; SUPERFAMILY:SSF54506:No Description. (230 aa)    
Predicted Functional Partners:
AHY47116.1
COG:COG1024: Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Pfam:PF00378:Crotonase superfamily; Pfam:PF00378:Crotonase superfamily; SUPERFAMILY:SSF52096:No Description.
       0.773
AHY47117.1
Hypothetical protein; COG:COG2127: Uncharacterized conserved protein [Function unknown]; Pfam:PF02617:Adaptor protein ClpS, core; Pfam:PF02617:Adaptor protein ClpS, core; SUPERFAMILY:SSF54736:Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like; Belongs to the ClpS family.
       0.773
AHY47114.1
COG:COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00455:AMP-binding, conserved site; SUPERFAMILY:SSF56801:No Description.
       0.752
AHY47113.1
COG:COG0667: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]; Pfam:PF00248:NADP-dependent oxidoreductase domain; Pfam:PF00248:NADP-dependent oxidoreductase domain; PRINTS:PR00069:Aldo/keto reductase subgroup; ProSitePatterns:PS00062:Aldo/keto reductase, conserved site; SUPERFAMILY:SSF51430:NADP-dependent oxidoreductase domain.
  
    0.486
AHY47112.1
Glycosidase; COG:COG0366: Glycosidases [Carbohydrate transport and metabolism]; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; SMART:SM00642:Glycosyl hydrolase, family 13, subfamily, catalytic domain; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily.
       0.405
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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