STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47119.1COG:COG2133: Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]; Pfam:PF07995:Glucose/Sorbosone dehydrogenase; Pfam:PF07995:Glucose/Sorbosone dehydrogenase; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF50952:Soluble quinoprotein glucose/sorbosone dehydrogenase. (380 aa)    
Predicted Functional Partners:
AHY47120.1
COG:COG0624: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]; Pfam:PF01546:Peptidase M20; Pfam:PF01546:Peptidase M20; PIRSF:PIRSF037238:Peptidase M20, glutamate carboxypeptidase; ProSitePatterns:PS00758:ArgE/DapE/ACY1/CPG2/YscS, conserved site; SUPERFAMILY:SSF53187:No Description.
       0.475
AHY47118.1
GGDEF: diguanylate cyclase (GGDEF) domain; TIGRFAM:TIGR00254:GGDEF domain; COG:COG5001: Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain [Signal transduction mechanisms]; Pfam:PF00563:Diguanylate phosphodiesterase, EAL domain; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00052:Diguanylate phosphodiesterase, EAL domain; SUPERFAMILY:SSF141868:Diguanylate phosphodiesterase, EAL domain.
       0.469
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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