STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47125.1COG:COG1022: Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00455:AMP-binding, conserved site; SUPERFAMILY:SSF56801:No Description. (605 aa)    
Predicted Functional Partners:
AHY47366.1
COG:COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00455:AMP-binding, conserved site; SUPERFAMILY:SSF56801:No Description.
 
 
0.923
AHY45923.1
COG:COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00455:AMP-binding, conserved site; SUPERFAMILY:SSF56801:No Description.
 
 
0.922
AHY47114.1
COG:COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00455:AMP-binding, conserved site; SUPERFAMILY:SSF56801:No Description.
 
 
0.917
AHY47122.1
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; COG:COG1250: 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Pfam:PF02737:3-hydroxyacyl-CoA dehydrogenase, NAD binding; SUPERFAMILY:SSF51735:No Description;MetaCyc: PWY-1361; MetaCyc: PWY-5109; MetaCyc: PWY-5136; MetaCyc: PWY-5138; MetaCyc: PWY-5789; MetaCyc: PWY-6435; MetaCyc: PWY-735; UniPathway: UPA00659.
  
 
 0.889
AHY47126.1
COG:COG1960: Acyl-CoA dehydrogenases [Lipid metabolism]; Pfam:PF00441:Acyl-CoA oxidase/dehydrogenase, type 1; Pfam:PF00441:Acyl-CoA oxidase/dehydrogenase, type 1; ProSitePatterns:PS00073:Acyl-CoA dehydrogenase, conserved site; SUPERFAMILY:SSF56645:Acyl-CoA dehydrogenase/oxidase.
  
 0.810
AHY47123.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF54637:No Description.
     
 0.784
AHY47124.1
COG:COG1695: Predicted transcriptional regulators [Transcription]; Pfam:PF03551:Transcription regulator PadR N-terminal; Pfam:PF03551:Transcription regulator PadR N-terminal; SUPERFAMILY:SSF46785:No Description.
       0.773
AHY45894.1
TIGRFAM:TIGR01746:Thioester reductase domain; COG:COG3320: Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00012:Phosphopantetheine attachment site; ProSiteProfiles:PS50075:Acyl carrier protein-like; SMART:SM00823:Polyketide synthase, phosphopantetheine-binding domain; SUPERFAMILY:SSF56801:No Description.
   
 0.759
AHY47121.1
AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase; TIGRFAM:TIGR01930:Thiolase; COG:COG0183: Acetyl-CoA acetyltransferase [Lipid metabolism]; Pfam:PF00108:Thiolase, N-terminal; PIRSF:PIRSF000429:Thiolase; ProSitePatterns:PS00098:Thiolase, acyl-enzyme intermediate active site; SUPERFAMILY:SSF53901:Thiolase-like; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.651
AHY45709.1
COG:COG1960: Acyl-CoA dehydrogenases [Lipid metabolism]; Pfam:PF00441:Acyl-CoA oxidase/dehydrogenase, type 1; Pfam:PF00441:Acyl-CoA oxidase/dehydrogenase, type 1; PIRSF:PIRSF016578:No Description; SUPERFAMILY:SSF56645:Acyl-CoA dehydrogenase/oxidase.
 
 0.639
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (18%) [HD]
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