STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47131.1COG:COG0523: Putative GTPases (G3E family) [General function prediction only]; Pfam:PF02492:CobW/HypB/UreG domain; Pfam:PF02492:CobW/HypB/UreG domain; SMART:SM00833:Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase. (343 aa)    
Predicted Functional Partners:
AHY47133.1
COG:COG0726: Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Pfam:PF01522:Polysaccharide deacetylase; SUPERFAMILY:SSF88713:Glycoside hydrolase/deacetylase, beta/alpha-barrel.
 
     0.872
AHY47132.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
   
   0.859
AHY47134.1
COG:COG0252: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation ribosomal structure and biogenesis]; Pfam:PF00710:Asparaginase/glutaminase; Pfam:PF00710:Asparaginase/glutaminase; PIRSF:PIRSF001220:Asparaginase/glutaminase; PRINTS:PR00139:Asparaginase/glutaminase; SMART:SM00870:Asparaginase/glutaminase; SUPERFAMILY:SSF53774:Asparaginase/glutaminase.
 
     0.645
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.603
AHY46571.1
COG:COG1734: DnaK suppressor protein [Signal transduction mechanisms]; Pfam:PF01258:Zinc finger, DksA/TraR C4-type; Pfam:PF01258:Zinc finger, DksA/TraR C4-type; ProSitePatterns:PS01102:Zinc finger, DksA/TraR C4-type conserved site; ProSiteProfiles:PS51128:Zinc finger, DksA/TraR C4-type; SUPERFAMILY:SSF57716:No Description.
  
  
 0.533
rpmB
TIGRFAM:TIGR00009:Ribosomal protein L28; COG:COG0227: Ribosomal protein L28 [Translation ribosomal structure and biogenesis]; Pfam:PF00830:Ribosomal protein L28; Hamap:MF_00373:Ribosomal protein L28; SUPERFAMILY:SSF143800:No Description; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.519
AHY46103.1
CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM:TIGR02467:Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase, core; COG:COG2242: Precorrin-6B methylase 2 [Coenzyme metabolism]; Pfam:PF00590:Tetrapyrrole methylase; PIRSF:PIRSF036428:Cobalamin (vitamin B12) biosynthesis CobL, precorrin-6Y C5,15-methyltransferase; SUPERFAMILY:SSF53790:Tetrapyrrole methylase.
     
 0.498
AHY46417.1
COG:COG0803: ABC-type metal ion transport system periplasmic component/surface adhesin [Inorganic ion transport and metabolism]; Pfam:PF01297:Periplasmic solute binding protein family; Pfam:PF01297:Periplasmic solute binding protein family; PRINTS:PR00691:Adhesin B; ProSiteProfiles:PS51257:Prokaryotic membrane lipoprotein lipid attachment site profile.; SUPERFAMILY:SSF53807:No Description; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.496
AHY47508.1
COG:COG0803: ABC-type metal ion transport system periplasmic component/surface adhesin [Inorganic ion transport and metabolism]; Pfam:PF01297:Periplasmic solute binding protein family; Pfam:PF01297:Periplasmic solute binding protein family; PRINTS:PR00690:Adhesion lipoprotein; SUPERFAMILY:SSF53807:No Description; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.496
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.492
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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