STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47159.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (179 aa)    
Predicted Functional Partners:
AHY47157.1
Hypothetical protein; COG:COG2361: Uncharacterized conserved protein [Function unknown]; Pfam:PF01934:Protein of unknown function DUF86; Pfam:PF01934:Protein of unknown function DUF86.
       0.590
AHY47158.1
COG:COG1669: Predicted nucleotidyltransferases [General function prediction only]; Pfam:PF01909:Nucleotidyl transferase domain; Pfam:PF01909:Nucleotidyl transferase domain; SUPERFAMILY:SSF81301:No Description.
       0.590
trpB-2
trpB: tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.486
trpF
COG:COG0135: Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]; Pfam:PF00697:N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain; Hamap:MF_00135:N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain; Pfam:PF00697:N-(5'phosphoribosyl) anthranilate isomerase (PRAI) like domain; SUPERFAMILY:SSF51366:Ribulose-phosphate binding barrel; Belongs to the TrpF family.
       0.484
trpA
trpA: tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.477
AHY47160.1
COG:COG0025: NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]; Pfam:PF00999:Cation/H+ exchanger; Pfam:PF00999:Cation/H+ exchanger.
       0.402
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.