STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47169.1TIGRFAM:TIGR01509:HAD-superfamily hydrolase, subfamily IA, variant 3; COG:COG0637: Predicted phosphatase/phosphohexomutase [General function prediction only]; Pfam:PF13419:HAD-like domain; PRINTS:PR00413:Haloacid dehalogenase/epoxide hydrolase; SUPERFAMILY:SSF56784:HAD-like domain. (230 aa)    
Predicted Functional Partners:
AHY48016.1
TIGRFAM:TIGR00276:Epoxyqueuosine reductase-QueG; COG:COG1600: Uncharacterized Fe-S protein [Energy production and conversion]; Pfam:PF13484:4Fe-4S double cluster binding domain; ProSitePatterns:PS00198:4Fe-4S ferredoxin, iron-sulphur binding, conserved site; ProSiteProfiles:PS51379:4Fe-4S ferredoxin-type, iron-sulpur binding domain; SUPERFAMILY:SSF46548:Alpha-helical ferredoxin.
      0.856
AHY47170.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.543
pgk
COG:COG0126: 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]; Pfam:PF00162:Phosphoglycerate kinase; Hamap:MF_00145:Phosphoglycerate kinase; Pfam:PF00162:Phosphoglycerate kinase; PIRSF:PIRSF000724:Phosphoglycerate kinase; PRINTS:PR00477:Phosphoglycerate kinase; ProSitePatterns:PS00111:Phosphoglycerate kinase, conserved site; SUPERFAMILY:SSF53748:Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
 
  
 0.486
AHY47171.1
Hypothetical protein; COG:COG2606: Uncharacterized conserved protein [Function unknown]; Pfam:PF04073:YbaK/aminoacyl-tRNA synthetase-associated domain; Pfam:PF04073:YbaK/aminoacyl-tRNA synthetase-associated domain; SUPERFAMILY:SSF55826:YbaK/aminoacyl-tRNA synthetase-associated domain.
       0.475
AHY45785.1
COG:COG0546: Predicted phosphatases [General function prediction only]; Pfam:PF13419:HAD-like domain; Pfam:PF13419:HAD-like domain; PRINTS:PR00413:Haloacid dehalogenase/epoxide hydrolase; SUPERFAMILY:SSF56784:HAD-like domain.
 
  
 0.471
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.