STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47170.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (147 aa)    
Predicted Functional Partners:
AHY47171.1
Hypothetical protein; COG:COG2606: Uncharacterized conserved protein [Function unknown]; Pfam:PF04073:YbaK/aminoacyl-tRNA synthetase-associated domain; Pfam:PF04073:YbaK/aminoacyl-tRNA synthetase-associated domain; SUPERFAMILY:SSF55826:YbaK/aminoacyl-tRNA synthetase-associated domain.
       0.625
AHY47169.1
TIGRFAM:TIGR01509:HAD-superfamily hydrolase, subfamily IA, variant 3; COG:COG0637: Predicted phosphatase/phosphohexomutase [General function prediction only]; Pfam:PF13419:HAD-like domain; PRINTS:PR00413:Haloacid dehalogenase/epoxide hydrolase; SUPERFAMILY:SSF56784:HAD-like domain.
       0.543
AHY47172.1
COG:COG2814: Arabinose efflux permease [Carbohydrate transport and metabolism]; Pfam:PF07690:Major facilitator superfamily; Pfam:PF07690:Major facilitator superfamily; PRINTS:PR01035:Tetracycline resistance protein, TetA/multidrug resistance protein MdtG; ProSiteProfiles:PS50850:Major facilitator superfamily domain; SUPERFAMILY:SSF103473:Major facilitator superfamily domain, general substrate transporter.
       0.451
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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