STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47174.1COG:COG3193: Uncharacterized protein possibly involved in utilization of glycolate and propanediol [General function prediction only]; Pfam:PF03928:Domain of unknown function DUF336; Pfam:PF03928:Domain of unknown function DUF336; SUPERFAMILY:SSF143744:No Description. (135 aa)    
Predicted Functional Partners:
AHY47977.1
ATPcob(I)alamin adenosyltransferase; TIGRFAM:TIGR00636:Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like; COG:COG2096: Uncharacterized conserved protein [Function unknown]; Pfam:PF01923:Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like; SUPERFAMILY:SSF89028:Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like;KEGG: 00860; MetaCyc: PWY-5508; MetaCyc: PWY-6268; MetaCyc: PWY-6269; PduO_Nterm.
     0.927
AHY46308.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
 
     0.529
AHY47175.1
Bacterial extracellular solute-binding protein, family 5 Middle; COG:COG0747: ABC-type dipeptide transport system periplasmic component [Amino acid transport and metabolism]; Pfam:PF00496:Bacterial extracellular solute-binding protein, family 5; SUPERFAMILY:SSF53850:No Description.
       0.515
AHY47173.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.513
AHY47138.1
TIGRFAM:TIGR01344:Malate synthase A; COG:COG2225: Malate synthase [Energy production and conversion]; Pfam:PF01274:Malate synthase; PIRSF:PIRSF001363:Malate synthase A; ProSitePatterns:PS00510:Malate synthase, conserved site; SUPERFAMILY:SSF51645:Malate synthase-like;KEGG: 00620; KEGG: 00630; UniPathway: UPA00703; malate_syn_A; Belongs to the malate synthase family.
  
  
 0.486
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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