STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47175.1Bacterial extracellular solute-binding protein, family 5 Middle; COG:COG0747: ABC-type dipeptide transport system periplasmic component [Amino acid transport and metabolism]; Pfam:PF00496:Bacterial extracellular solute-binding protein, family 5; SUPERFAMILY:SSF53850:No Description. (318 aa)    
Predicted Functional Partners:
AHY46057.1
Bacterial extracellular solute-binding protein, family 5 Middle; COG:COG0747: ABC-type dipeptide transport system periplasmic component [Amino acid transport and metabolism]; Pfam:PF00496:Bacterial extracellular solute-binding protein, family 5; SUPERFAMILY:SSF53850:No Description.
  
  
  0.962
AHY46051.1
COG:COG0601: ABC-type dipeptide/oligopeptide/nickel transport systems permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
 
 
 0.840
AHY46052.1
COG:COG1173: ABC-type dipeptide/oligopeptide/nickel transport systems permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
 
 
 0.823
AHY46054.1
TIGRFAM:TIGR01727:Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; COG:COG4608: ABC-type oligopeptide transport system ATPase component [Amino acid transport and metabolism]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; oligo_HPY; Belongs to the ABC transporter superfamily.
 
  
 0.717
AHY46053.1
TIGRFAM:TIGR01727:Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; COG:COG0444: ABC-type dipeptide/oligopeptide/nickel transport system ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Pfam:PF08352:Oligopeptide/dipeptide ABC transporter, C-terminal; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; oligo_HPY; Belongs to the ABC transporter superfamily.
 
  
 0.691
AHY46050.1
COG:COG4166: ABC-type oligopeptide transport system periplasmic component [Amino acid transport and metabolism]; Pfam:PF00496:Bacterial extracellular solute-binding protein, family 5; Pfam:PF00496:Bacterial extracellular solute-binding protein, family 5; PIRSF:PIRSF002741:No Description; SUPERFAMILY:SSF53850:No Description.
 
  
 0.627
AHY47174.1
COG:COG3193: Uncharacterized protein possibly involved in utilization of glycolate and propanediol [General function prediction only]; Pfam:PF03928:Domain of unknown function DUF336; Pfam:PF03928:Domain of unknown function DUF336; SUPERFAMILY:SSF143744:No Description.
       0.515
AHY47176.1
Bacterial extracellular solute-binding protein, family 5 Middle; COG:COG0747: ABC-type dipeptide transport system periplasmic component [Amino acid transport and metabolism]; Pfam:PF00496:Bacterial extracellular solute-binding protein, family 5; SUPERFAMILY:SSF53850:No Description.
       0.479
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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