STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsK30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (141 aa)    
Predicted Functional Partners:
rpsF
S6: ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 0.999
rpsP
TIGRFAM:TIGR00002:Ribosomal protein S16; COG:COG0228: Ribosomal protein S16 [Translation ribosomal structure and biogenesis]; Pfam:PF00886:Ribosomal protein S16; Hamap:MF_00385:Ribosomal protein S16; SUPERFAMILY:SSF54565:Ribosomal protein S16 domain; Belongs to the bacterial ribosomal protein bS16 family.
  
 0.999
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 0.999
rpsI
COG:COG0103: Ribosomal protein S9 [Translation ribosomal structure and biogenesis]; Pfam:PF00380:Ribosomal protein S9; Hamap:MF_00532_B:Ribosomal protein S9, bacterial/plastid; Pfam:PF00380:Ribosomal protein S9; ProSitePatterns:PS00360:Ribosomal protein S9, conserved site; SUPERFAMILY:SSF54211:Ribosomal protein S5 domain 2-type fold; Belongs to the universal ribosomal protein uS9 family.
 
 0.999
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
 0.999
rplQ
TIGRFAM:TIGR00059:Ribosomal protein L17; COG:COG0203: Ribosomal protein L17 [Translation ribosomal structure and biogenesis]; Pfam:PF01196:Ribosomal protein L17; Hamap:MF_01368:Ribosomal protein L17; ProSitePatterns:PS01167:Ribosomal protein L17; SUPERFAMILY:SSF64263:Ribosomal protein L17.
 
 
 0.999
rpoA
rpoA: DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 0.999
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
 0.999
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
 0.999
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
 0.999
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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