Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplD | rplE | RradSPS_1942 | RradSPS_1931 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
| rplD | rplF | RradSPS_1942 | RradSPS_1928 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
| rplD | rplN | RradSPS_1942 | RradSPS_1933 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| rplD | rplQ | RradSPS_1942 | RradSPS_1914 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | TIGRFAM:TIGR00059:Ribosomal protein L17; COG:COG0203: Ribosomal protein L17 [Translation ribosomal structure and biogenesis]; Pfam:PF01196:Ribosomal protein L17; Hamap:MF_01368:Ribosomal protein L17; ProSitePatterns:PS01167:Ribosomal protein L17; SUPERFAMILY:SSF64263:Ribosomal protein L17. | 0.999 |
| rplD | rplR | RradSPS_1942 | RradSPS_1927 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplD | rplX | RradSPS_1942 | RradSPS_1932 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| rplD | rpmD | RradSPS_1942 | RradSPS_1925 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | TIGRFAM:TIGR01308:Ribosomal protein L30, bacterial-type; COG:COG1841: Ribosomal protein L30/L7E [Translation ribosomal structure and biogenesis]; Pfam:PF00327:Ribosomal protein L30, ferredoxin-like fold domain; Hamap:MF_01371_B:Ribosomal protein L30, bacterial-type; PIRSF:PIRSF002211:Ribosomal protein L30, bacterial-type; SUPERFAMILY:SSF55129:Ribosomal protein L30, ferredoxin-like fold domain; rpmD_bact. | 0.999 |
| rplD | rpsD | RradSPS_1942 | RradSPS_1916 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| rplD | rpsH | RradSPS_1942 | RradSPS_1929 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
| rplD | rpsK | RradSPS_1942 | RradSPS_1917 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
| rplE | rplD | RradSPS_1931 | RradSPS_1942 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
| rplE | rplF | RradSPS_1931 | RradSPS_1928 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
| rplE | rplN | RradSPS_1931 | RradSPS_1933 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| rplE | rplQ | RradSPS_1931 | RradSPS_1914 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | TIGRFAM:TIGR00059:Ribosomal protein L17; COG:COG0203: Ribosomal protein L17 [Translation ribosomal structure and biogenesis]; Pfam:PF01196:Ribosomal protein L17; Hamap:MF_01368:Ribosomal protein L17; ProSitePatterns:PS01167:Ribosomal protein L17; SUPERFAMILY:SSF64263:Ribosomal protein L17. | 0.998 |
| rplE | rplR | RradSPS_1931 | RradSPS_1927 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplE | rplX | RradSPS_1931 | RradSPS_1932 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| rplE | rpmD | RradSPS_1931 | RradSPS_1925 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | TIGRFAM:TIGR01308:Ribosomal protein L30, bacterial-type; COG:COG1841: Ribosomal protein L30/L7E [Translation ribosomal structure and biogenesis]; Pfam:PF00327:Ribosomal protein L30, ferredoxin-like fold domain; Hamap:MF_01371_B:Ribosomal protein L30, bacterial-type; PIRSF:PIRSF002211:Ribosomal protein L30, bacterial-type; SUPERFAMILY:SSF55129:Ribosomal protein L30, ferredoxin-like fold domain; rpmD_bact. | 0.999 |
| rplE | rpsD | RradSPS_1931 | RradSPS_1916 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
| rplE | rpsH | RradSPS_1931 | RradSPS_1929 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
| rplE | rpsK | RradSPS_1931 | RradSPS_1917 | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
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