STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47278.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (416 aa)    
Predicted Functional Partners:
AHY47281.1
Prepilin-type N-terminal cleavage/methylation domain; TIGRFAM:TIGR02532:Prokaryotic N-terminal methylation site; COG:COG4970: Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF07963:Prokaryotic N-terminal methylation site; ProSitePatterns:PS00409:Prokaryotic N-terminal methylation site; SUPERFAMILY:SSF54523:No Description; IV_pilin_GFxxxE.
     
 0.780
AHY47279.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; ProSitePatterns:PS00409:Prokaryotic N-terminal methylation site.
       0.773
AHY47280.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY47277.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.668
ychF
TIGR00092: GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.543
AHY47275.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.533
AHY47282.1
Glyoxalase-like domain; COG:COG0346: Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]; Pfam:PF12681:Glyoxalase-like domain; ProSitePatterns:PS00934:Glyoxalase I, conserved site; SUPERFAMILY:SSF54593:No Description.
       0.493
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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