STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47288.1COG:COG2324: Predicted membrane protein [Function unknown]; Pfam:PF04240:Protein of unknown function DUF422; Pfam:PF04240:Protein of unknown function DUF422. (278 aa)    
Predicted Functional Partners:
AHY47290.1
COG:COG1233: Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF13450:NAD(P)-binding Rossmann-like domain; Pfam:PF13450:NAD(P)-binding Rossmann-like domain; SUPERFAMILY:SSF51905:No Description.
 
   
 0.825
AHY47289.1
UbiA prenyltransferase family; COG:COG0382: 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]; Pfam:PF01040:UbiA prenyltransferase family.
 
   
 0.778
AHY46014.1
COG:COG1562: Phytoene/squalene synthetase [Lipid metabolism]; Pfam:PF00494:Squalene/phytoene synthase; Pfam:PF00494:Squalene/phytoene synthase; ProSitePatterns:PS01045:Squalene/phytoene synthase, conserved site; SUPERFAMILY:SSF48576:Terpenoid synthase.
 
  
 0.758
AHY47809.1
TIGRFAM:TIGR01167:LPXTG cell wall anchor domain; Pfam:PF14344:Domain of unknown function DUF4397; LPXTG_anchor.
  
    0.705
AHY47822.1
Pfam:PF14344:Domain of unknown function DUF4397.
  
    0.691
AHY47414.1
Flavin containing amine oxidoreductase; COG:COG1233: Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF01593:Amine oxidase; SUPERFAMILY:SSF51905:No Description.
 
   
 0.679
AHY47287.1
COG:COG4398: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF08495:FIST domain, N-terminal; Pfam:PF08495:FIST domain, N-terminal; PIRSF:PIRSF018953:Uncharacterised conserved protein UCP018953; SMART:SM00897:FIST domain, N-terminal.
       0.598
AHY46015.1
TIGRFAM:TIGR02734:Phytoene desaturase CrtI family; COG:COG1233: Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF01593:Amine oxidase; PRINTS:PR00419:Adrenodoxin reductase family signature; SUPERFAMILY:SSF51905:No Description; crtI_fam.
 
   
 0.593
AHY45841.1
COG:COG1233: Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF13450:NAD(P)-binding Rossmann-like domain; Pfam:PF13450:NAD(P)-binding Rossmann-like domain; PRINTS:PR00411:Pyridine nucleotide disulphide reductase class-I signature; SUPERFAMILY:SSF51905:No Description.
 
   
 0.506
AHY46449.1
TIGRFAM:TIGR00229:PAS domain; COG:COG2202: FOG: PAS/PAC domain [Signal transduction mechanisms]; Pfam:PF08447:PAS fold-3; ProSiteProfiles:PS50112:PAS domain; SMART:SM00091:PAS domain; SUPERFAMILY:SSF55785:PAS domain; sensory_box.
  
     0.496
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.