STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47303.1Phage integrase family; COG:COG4974: Site-specific recombinase XerD [DNA replication recombination and repair]; Pfam:PF00589:Integrase, catalytic; SUPERFAMILY:SSF56349:DNA breaking-rejoining enzyme, catalytic core; Belongs to the 'phage' integrase family. (375 aa)    
Predicted Functional Partners:
AHY47304.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
whiA
Sporulation regulator WhiA; Involved in cell division and chromosome segregation.
  
    0.546
AHY46846.1
COG:COG1040: Predicted amidophosphoribosyltransferases [General function prediction only]; Pfam:PF00156:Phosphoribosyltransferase domain; Pfam:PF00156:Phosphoribosyltransferase domain; SUPERFAMILY:SSF53271:No Description.
   
    0.444
apt
Apt: adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.437
AHY47443.1
COG:COG0287: Prephenate dehydrogenase [Amino acid transport and metabolism]; Pfam:PF02153:Prephenate dehydrogenase; Pfam:PF02153:Prephenate dehydrogenase; ProSiteProfiles:PS51176:Prephenate dehydrogenase; SUPERFAMILY:SSF51735:No Description.
  
    0.426
AHY46123.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF53271:No Description.
   
    0.406
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.