STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47306.1Putative transposase of IS4/5 family (DUF4096); COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13340:Putative transposase IS4/IS5 family. (125 aa)    
Predicted Functional Partners:
AHY47305.1
Transposase DDE domain; COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13586:Transposase DDE domain.
    0.994
AHY45597.1
Transposase DDE domain; COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13586:Transposase DDE domain.
    0.978
AHY46213.1
Transposase DDE domain; COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13586:Transposase DDE domain.
    0.978
AHY47383.1
Transposase DDE domain; COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13586:Transposase DDE domain.
    0.978
AHY46295.1
Transposase; COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13586:Transposase DDE domain; Pfam:PF13586:Transposase DDE domain; SUPERFAMILY:SSF53098:Ribonuclease H-like domain.
 
     0.906
AHY47307.1
COG:COG0583: Transcriptional regulator [Transcription]; Pfam:PF03466:LysR, substrate-binding; Pfam:PF03466:LysR, substrate-binding; ProSiteProfiles:PS50931:Transcription regulator HTH, LysR; SUPERFAMILY:SSF53850:No Description; Belongs to the LysR transcriptional regulatory family.
       0.473
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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