STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47332.1Rrf2 family protein; TIGRFAM:TIGR00738:Transcription regulator Rrf2-like; COG:COG1959: Predicted transcriptional regulator [Transcription]; Pfam:PF02082:Transcription regulator Rrf2-like; ProSitePatterns:PS01332:Transcription regulator Rrf2-like; ProSiteProfiles:PS51197:Transcription regulator Rrf2-like; SUPERFAMILY:SSF46785:No Description; rrf2_super. (154 aa)    
Predicted Functional Partners:
AHY45853.1
Rrf2 family protein; TIGRFAM:TIGR00738:Transcription regulator Rrf2-like; COG:COG1959: Predicted transcriptional regulator [Transcription]; Pfam:PF02082:Transcription regulator Rrf2-like; ProSiteProfiles:PS51197:Transcription regulator Rrf2-like; SUPERFAMILY:SSF46785:No Description; rrf2_super.
  
     0.774
AHY47333.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.746
AHY45374.1
COG:COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; PIRSF:PIRSF005572:Cysteine desulfurase, NifS; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
  
  
 0.507
AHY46640.1
COG:COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; PIRSF:PIRSF005572:Cysteine desulfurase, NifS; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
  
  
 0.507
mnmA
trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
  
 0.500
AHY47334.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.474
AHY45438.1
SPFH domain / Band 7 family; COG:COG0330: Membrane protease subunits stomatin/prohibitin homologs [Posttranslational modification protein turnover chaperones]; Pfam:PF01145:Band 7 protein; SMART:SM00244:Band 7 protein; SUPERFAMILY:SSF117892:No Description.
 
     0.405
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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