STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47334.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (296 aa)    
Predicted Functional Partners:
AHY47333.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.489
AHY47332.1
Rrf2 family protein; TIGRFAM:TIGR00738:Transcription regulator Rrf2-like; COG:COG1959: Predicted transcriptional regulator [Transcription]; Pfam:PF02082:Transcription regulator Rrf2-like; ProSitePatterns:PS01332:Transcription regulator Rrf2-like; ProSiteProfiles:PS51197:Transcription regulator Rrf2-like; SUPERFAMILY:SSF46785:No Description; rrf2_super.
       0.474
AHY47335.1
COG:COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00455:AMP-binding, conserved site; SUPERFAMILY:SSF56801:No Description.
       0.403
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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