STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47340.1Pfam:PF01243:Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SUPERFAMILY:SSF50475:FMN-binding split barrel;UniPathway: UPA00190; UniPathway: UPA00190. (138 aa)    
Predicted Functional Partners:
AHY47339.1
COG:COG0596: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Pfam:PF12697:Alpha/beta hydrolase family; Pfam:PF12697:Alpha/beta hydrolase family; PRINTS:PR00111:Alpha/beta hydrolase fold-1; SUPERFAMILY:SSF53474:No Description.
       0.773
AHY47341.1
TIGRFAM:TIGR00051:Acyl-CoA thioester hydrolase YbgC/YbaW family; COG:COG0824: Predicted thioesterase [General function prediction only]; Pfam:PF13279:Thioesterase-like superfamily; PIRSF:PIRSF003230:Acyl-CoA thioester hydrolase YbgC/YbaW family; SUPERFAMILY:SSF54637:No Description;KEGG: 00061; KEGG: 00130; KEGG: 00362; KEGG: 00592; KEGG: 00903.
       0.773
AHY47342.1
COG:COG1024: Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]; Pfam:PF00378:Crotonase superfamily; Pfam:PF00378:Crotonase superfamily; SUPERFAMILY:SSF52096:No Description.
       0.762
AHY47343.1
TIGRFAM:TIGR00640:Methylmalonyl-CoA mutase, C-terminal; COG:COG2185: Methylmalonyl-CoA mutase C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]; Pfam:PF02310:Cobalamin (vitamin B12)-binding domain; ProSiteProfiles:PS51332:Cobalamin (vitamin B12)-binding domain; SUPERFAMILY:SSF52242:Cobalamin (vitamin B12)-binding domain;KEGG: 00280; KEGG: 00640; MetaCyc: PWY-5743; acid_CoA_mut_C.
       0.519
AHY47344.1
COG:COG1215: Glycosyltransferases probably involved in cell wall biogenesis [Cell envelope biogenesis outer membrane]; Pfam:PF00535:Glycosyl transferase, family 2; SUPERFAMILY:SSF53448:No Description.
       0.519
AHY47345.1
Pyridine nucleotide-disulfide oxidoreductase; COG:COG1251: NAD(P)H-nitrite reductase [Energy production and conversion]; Pfam:PF07992:Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain; PRINTS:PR00368:FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SUPERFAMILY:SSF51905:No Description.
       0.519
AHY47346.1
Nodulation protein S (NodS); COG:COG2242: Precorrin-6B methylase 2 [Coenzyme metabolism]; Pfam:PF05401:SAM-dependent methyltransferase, NodS-related; SUPERFAMILY:SSF53335:No Description.
       0.519
AHY47347.1
COG:COG1960: Acyl-CoA dehydrogenases [Lipid metabolism]; Pfam:PF02771:Acyl-CoA dehydrogenase, N-terminal; Pfam:PF02771:Acyl-CoA dehydrogenase, N-terminal; SUPERFAMILY:SSF56645:Acyl-CoA dehydrogenase/oxidase.
       0.519
AHY47348.1
COG:COG0726: Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Pfam:PF01522:Polysaccharide deacetylase; Pfam:PF01522:Polysaccharide deacetylase; SUPERFAMILY:SSF88713:Glycoside hydrolase/deacetylase, beta/alpha-barrel.
       0.519
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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