STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47344.1COG:COG1215: Glycosyltransferases probably involved in cell wall biogenesis [Cell envelope biogenesis outer membrane]; Pfam:PF00535:Glycosyl transferase, family 2; SUPERFAMILY:SSF53448:No Description. (269 aa)    
Predicted Functional Partners:
AHY47346.1
Nodulation protein S (NodS); COG:COG2242: Precorrin-6B methylase 2 [Coenzyme metabolism]; Pfam:PF05401:SAM-dependent methyltransferase, NodS-related; SUPERFAMILY:SSF53335:No Description.
  
 0.977
AHY47347.1
COG:COG1960: Acyl-CoA dehydrogenases [Lipid metabolism]; Pfam:PF02771:Acyl-CoA dehydrogenase, N-terminal; Pfam:PF02771:Acyl-CoA dehydrogenase, N-terminal; SUPERFAMILY:SSF56645:Acyl-CoA dehydrogenase/oxidase.
 
     0.940
AHY47348.1
COG:COG0726: Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Pfam:PF01522:Polysaccharide deacetylase; Pfam:PF01522:Polysaccharide deacetylase; SUPERFAMILY:SSF88713:Glycoside hydrolase/deacetylase, beta/alpha-barrel.
  
  
 0.864
AHY47343.1
TIGRFAM:TIGR00640:Methylmalonyl-CoA mutase, C-terminal; COG:COG2185: Methylmalonyl-CoA mutase C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]; Pfam:PF02310:Cobalamin (vitamin B12)-binding domain; ProSiteProfiles:PS51332:Cobalamin (vitamin B12)-binding domain; SUPERFAMILY:SSF52242:Cobalamin (vitamin B12)-binding domain;KEGG: 00280; KEGG: 00640; MetaCyc: PWY-5743; acid_CoA_mut_C.
       0.773
AHY47345.1
Pyridine nucleotide-disulfide oxidoreductase; COG:COG1251: NAD(P)H-nitrite reductase [Energy production and conversion]; Pfam:PF07992:Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain; PRINTS:PR00368:FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SUPERFAMILY:SSF51905:No Description.
       0.773
AHY45783.1
COG:COG1215: Glycosyltransferases probably involved in cell wall biogenesis [Cell envelope biogenesis outer membrane]; Pfam:PF00535:Glycosyl transferase, family 2; SUPERFAMILY:SSF53448:No Description.
 
      0.768
AHY46212.1
COG:COG1216: Predicted glycosyltransferases [General function prediction only]; Pfam:PF13641:Glycosyltransferase like family 2; SUPERFAMILY:SSF53448:No Description.
 
   
 0.657
AHY46457.1
COG:COG1216: Predicted glycosyltransferases [General function prediction only]; Pfam:PF00535:Glycosyl transferase, family 2; SUPERFAMILY:SSF53448:No Description.
  
 
 0.627
AHY46210.1
COG:COG4671: Predicted glycosyl transferase [General function prediction only]; Pfam:PF13528:Glycosyl transferase family 1; SUPERFAMILY:SSF53756:No Description.
 
    0.607
AHY45490.1
TPR repeat; COG:COG3063: Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF13414:TPR repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
  
 
 0.604
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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