STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47353.1FAD linked oxidase, C-terminal domain; COG:COG0277: FAD/FMN-containing dehydrogenases [Energy production and conversion]; Pfam:PF02913:FAD-linked oxidase, C-terminal; ProSitePatterns:PS00198:4Fe-4S ferredoxin, iron-sulphur binding, conserved site; ProSiteProfiles:PS51379:4Fe-4S ferredoxin-type, iron-sulpur binding domain; SUPERFAMILY:SSF55103:FAD-linked oxidase-like, C-terminal. (958 aa)    
Predicted Functional Partners:
AHY45756.1
TIGRFAM:TIGR00273:4Fe-4S binding protein; COG:COG1139: Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]; Pfam:PF02589:Domain of unknown function DUF162; ProSitePatterns:PS00198:4Fe-4S ferredoxin, iron-sulphur binding, conserved site; SUPERFAMILY:SSF100950:No Description.
 
 
 0.823
AHY47352.1
COG:COG2816: NTP pyrophosphohydrolases containing a Zn-finger probably nucleic-acid-binding [DNA replication recombination and repair]; Pfam:PF00293:NUDIX hydrolase domain; Pfam:PF00293:NUDIX hydrolase domain; ProSitePatterns:PS00893:NUDIX hydrolase, conserved site; ProSiteProfiles:PS51462:NUDIX hydrolase domain; SUPERFAMILY:SSF55811:NUDIX hydrolase domain-like.
  
   0.789
AHY47351.1
COG:COG0251: Putative translation initiation inhibitor yjgF family [Translation ribosomal structure and biogenesis]; Pfam:PF01042:YjgF/Yer057p/UK114 family; Pfam:PF01042:YjgF/Yer057p/UK114 family; SUPERFAMILY:SSF55298:Endoribonuclease L-PSP/chorismate mutase-like.
       0.773
AHY45757.1
Hypothetical protein; COG:COG1556: Uncharacterized conserved protein [Function unknown]; Pfam:PF02589:Domain of unknown function DUF162; Pfam:PF02589:Domain of unknown function DUF162; SUPERFAMILY:SSF100950:No Description.
  
 
 0.753
pdxH
pdxH: pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.718
AHY47350.1
COG:COG2343: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF04248:Protein of unknown function DUF427; Pfam:PF04248:Protein of unknown function DUF427.
       0.718
AHY47837.1
COG:COG0069: Glutamate synthase domain 2 [Amino acid transport and metabolism]; Pfam:PF01645:Glutamate synthase, central-C; ProSiteProfiles:PS51278:Glutamine amidotransferase type 2 domain; SUPERFAMILY:SSF51395:No Description;UniPathway: UPA00045.
    
 0.673
AHY46215.1
COG:COG1304: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases [Energy production and conversion]; Pfam:PF01070:FMN-dependent dehydrogenase; Pfam:PF01070:FMN-dependent dehydrogenase; PIRSF:PIRSF000138:Alpha-hydroxy acid dehydrogenase, FMN-dependent; ProSitePatterns:PS00557:FMN-dependent alpha-hydroxy acid dehydrogenase, active site; ProSiteProfiles:PS51349:Alpha-hydroxy acid dehydrogenase, FMN-dependent; SUPERFAMILY:SSF51395:No Description.
  
 0.627
AHY47920.1
TIGRFAM:TIGR03966:Heme/flavin dehydrogenase, Rv0694; COG:COG1304: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases [Energy production and conversion]; Pfam:PF01070:FMN-dependent dehydrogenase; PIRSF:PIRSF000138:Alpha-hydroxy acid dehydrogenase, FMN-dependent; ProSiteProfiles:PS51349:Alpha-hydroxy acid dehydrogenase, FMN-dependent; SUPERFAMILY:SSF51395:No Description; actino_HemFlav.
  
 0.627
AHY47773.1
FAD binding domain; COG:COG0277: FAD/FMN-containing dehydrogenases [Energy production and conversion]; Pfam:PF01565:FAD linked oxidase, N-terminal; ProSiteProfiles:PS51387:FAD-binding, type 2; SUPERFAMILY:SSF56176:FAD-binding, type 2;MetaCyc: PWY-6386; UniPathway: UPA00219.
 
  
 0.616
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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