STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47358.1COG:COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis outer membrane / General function prediction only]; Pfam:PF13378:Enolase C-terminal domain-like; Pfam:PF13378:Enolase C-terminal domain-like; SMART:SM00922:Mandelate racemase/muconate lactonizing enzyme, C-terminal; SUPERFAMILY:SSF51604:No Description. (370 aa)    
Predicted Functional Partners:
AHY47357.1
COG:COG1012: NAD-dependent aldehyde dehydrogenases [Energy production and conversion]; Pfam:PF00171:Aldehyde dehydrogenase domain; Pfam:PF00171:Aldehyde dehydrogenase domain; ProSitePatterns:PS00687:Aldehyde dehydrogenase, conserved site; SUPERFAMILY:SSF53720:Aldehyde/histidinol dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
 0.626
AHY47356.1
COG:COG1454: Alcohol dehydrogenase class IV [Energy production and conversion]; Pfam:PF00465:Alcohol dehydrogenase, iron-type; Pfam:PF00465:Alcohol dehydrogenase, iron-type; SUPERFAMILY:SSF56796:No Description.
       0.616
AHY47359.1
COG:COG1732: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis outer membrane]; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; Pfam:PF04069:ABC-type glycine betaine transport system, substrate-binding domain; SUPERFAMILY:SSF53850:No Description.
       0.507
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
   
 0.454
AHY46347.1
TIGRFAM:TIGR02425:4-carboxymuconolactone decarboxylase; COG:COG0599: Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]; Pfam:PF02627:Carboxymuconolactone decarboxylase; SUPERFAMILY:SSF69118:No Description;KEGG: 00362; UniPathway: UPA00157; decarb_PcaC.
  
  
 0.451
AHY46022.1
DnaB: replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
    0.449
AHY47892.1
GMC oxidoreductase; COG:COG2303: Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Pfam:PF05199:Glucose-methanol-choline oxidoreductase, C-terminal; ProSitePatterns:PS00198:4Fe-4S ferredoxin, iron-sulphur binding, conserved site; ProSiteProfiles:PS51379:4Fe-4S ferredoxin-type, iron-sulpur binding domain; SUPERFAMILY:SSF51905:No Description.
 
     0.438
AHY45825.1
Pfam:PF02426:Muconolactone isomerase domain; SUPERFAMILY:SSF54909:Dimeric alpha-beta barrel.
  
  
 0.414
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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