STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47363.1TIGRFAM:TIGR00374:Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD; COG:COG0392: Predicted integral membrane protein [Function unknown]; Pfam:PF03706:Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD. (383 aa)    
Predicted Functional Partners:
AHY47914.1
COG:COG3552: Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]; Pfam:PF05762:Uncharacterised protein family CoxE-like.
  
     0.528
AHY47361.1
TIGRFAM:TIGR01186:Glycine betaine transport ATP-binding subunit; COG:COG1125: ABC-type proline/glycine betaine transport systems ATPase components [Amino acid transport and metabolism]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS51371:Cystathionine beta-synthase, core; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
    0.518
AHY47360.1
COG:COG1174: ABC-type proline/glycine betaine transport systems permease component [Amino acid transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
  
    0.445
AHY47362.1
COG:COG1174: ABC-type proline/glycine betaine transport systems permease component [Amino acid transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
  
    0.445
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.