STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47381.1COG:COG1669: Predicted nucleotidyltransferases [General function prediction only]; Pfam:PF01909:Nucleotidyl transferase domain; Pfam:PF01909:Nucleotidyl transferase domain; SUPERFAMILY:SSF81301:No Description. (112 aa)    
Predicted Functional Partners:
AHY47157.1
Hypothetical protein; COG:COG2361: Uncharacterized conserved protein [Function unknown]; Pfam:PF01934:Protein of unknown function DUF86; Pfam:PF01934:Protein of unknown function DUF86.
 
  
 0.835
AHY47380.1
Pfam:PF09656:Uncharacterised protein family PGPGW, transmembrane.
       0.513
AHY47382.1
Putative transposase of IS4/5 family (DUF4096); COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13340:Putative transposase IS4/IS5 family.
       0.484
AHY47383.1
Transposase DDE domain; COG:COG3293: Transposase and inactivated derivatives [DNA replication recombination and repair]; Pfam:PF13586:Transposase DDE domain.
       0.484
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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