STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47415.1Pfam:PF14103:Protein of unknown function DUF4276. (215 aa)    
Predicted Functional Partners:
AHY47416.1
AAA domain; COG:COG4637: Predicted ATPase [General function prediction only]; Pfam:PF13304:AAA domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.818
AHY47417.1
TIGRFAM:TIGR01056:DNA topoisomerase III, bacterial-type; COG:COG0550: Topoisomerase IA [DNA replication recombination and repair]; Pfam:PF01131:DNA topoisomerase, type IA, central; PRINTS:PR00417:DNA topoisomerase, type IA; ProSitePatterns:PS00396:DNA topoisomerase, type IA, active site; SMART:SM00437:DNA topoisomerase, type IA, DNA-binding; SUPERFAMILY:SSF56712:DNA topoisomerase, type IA, core domain.
       0.658
AHY47411.1
Dolichyl-phosphate-mannose-protein mannosyltransferase; COG:COG5542: Predicted integral membrane protein [Function unknown]; Pfam:PF13231:Dolichyl-phosphate-mannose-protein mannosyltransferase.
       0.590
AHY47412.1
COG:COG0842: ABC-type multidrug transport system permease component [Defense mechanisms]; Pfam:PF01061:ABC-2 type transporter; Pfam:PF01061:ABC-2 type transporter; PIRSF:PIRSF006648:No Description; PRINTS:PR00164:ABC-2 transporter; ProSiteProfiles:PS51012:ABC-2.
       0.590
AHY47413.1
COG:COG1131: ABC-type multidrug transport system ATPase component [Defense mechanisms]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.590
AHY47414.1
Flavin containing amine oxidoreductase; COG:COG1233: Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF01593:Amine oxidase; SUPERFAMILY:SSF51905:No Description.
       0.590
AHY47410.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.498
AHY47418.1
COG:COG0580: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]; Pfam:PF00230:Major intrinsic protein; Pfam:PF00230:Major intrinsic protein; PRINTS:PR00783:Major intrinsic protein; ProSitePatterns:PS00221:Major intrinsic protein, conserved site; SUPERFAMILY:SSF81338:Aquaporin-like; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.485
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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