STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47431.1COG:COG0537: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]; Pfam:PF01230:Histidine triad (HIT) protein; Pfam:PF01230:Histidine triad (HIT) protein; PRINTS:PR00332:Histidine triad (HIT) protein; ProSitePatterns:PS00892:Histidine triad, conserved site; ProSiteProfiles:PS51084:HIT-like domain; SUPERFAMILY:SSF54197:HIT-like domain. (116 aa)    
Predicted Functional Partners:
AHY46803.1
TIGR00046: RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
    
 0.657
AHY47432.1
COG:COG1363: Cellulase M and related proteins [Carbohydrate transport and metabolism]; Pfam:PF05343:Peptidase M42; Pfam:PF05343:Peptidase M42; PIRSF:PIRSF001123:Peptidase M42; SUPERFAMILY:SSF53187:No Description.
  
    0.609
AHY47055.1
COG:COG1061: DNA or RNA helicases of superfamily II [Transcription / DNA replication recombination and repair]; Pfam:PF00271:Helicase, C-terminal; Pfam:PF00271:Helicase, C-terminal; ProSiteProfiles:PS51194:Helicase, C-terminal; SMART:SM00487:Helicase, superfamily 1/2, ATP-binding domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
 
  0.457
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.446
AHY47433.1
Pfam:PF13030:Protein of unknown function DUF3891.
       0.429
AHY47434.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.429
AHY45447.1
Sulfotransferase family; COG:COG3551: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF13469:Sulfotransferase family; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
 
 0.411
ybeY
TIGR00043: probable rRNA maturation factor YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
 
 
   0.410
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.