STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47433.1Pfam:PF13030:Protein of unknown function DUF3891. (240 aa)    
Predicted Functional Partners:
AHY47434.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY47435.1
PAP2 superfamily; Pfam:PF01569:Phosphatidic acid phosphatase type 2/haloperoxidase; SMART:SM00014:Phosphatidic acid phosphatase type 2/haloperoxidase; SUPERFAMILY:SSF48317:Phosphatidic acid phosphatase type 2/haloperoxidase.
       0.636
AHY47432.1
COG:COG1363: Cellulase M and related proteins [Carbohydrate transport and metabolism]; Pfam:PF05343:Peptidase M42; Pfam:PF05343:Peptidase M42; PIRSF:PIRSF001123:Peptidase M42; SUPERFAMILY:SSF53187:No Description.
       0.565
AHY46200.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
     0.489
AHY47654.1
COG:COG2124: Cytochrome P450 [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00067:Cytochrome P450; SUPERFAMILY:SSF48264:Cytochrome P450;Reactome: REACT_13433.
  
     0.485
AHY47431.1
COG:COG0537: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]; Pfam:PF01230:Histidine triad (HIT) protein; Pfam:PF01230:Histidine triad (HIT) protein; PRINTS:PR00332:Histidine triad (HIT) protein; ProSitePatterns:PS00892:Histidine triad, conserved site; ProSiteProfiles:PS51084:HIT-like domain; SUPERFAMILY:SSF54197:HIT-like domain.
       0.429
AHY47436.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.426
AHY47073.1
Type I phosphodiesterase / nucleotide pyrophosphatase; COG:COG1524: Uncharacterized proteins of the AP superfamily [General function prediction only]; Pfam:PF01663:Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SUPERFAMILY:SSF53649:Alkaline-phosphatase-like, core domain.
  
     0.403
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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