STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47447.1COG:COG0590: Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation ribosomal structure and biogenesis]; Pfam:PF00383:CMP/dCMP deaminase, zinc-binding; Pfam:PF00383:CMP/dCMP deaminase, zinc-binding; ProSitePatterns:PS00903:APOBEC/CMP deaminase, zinc-binding; SUPERFAMILY:SSF53927:Cytidine deaminase-like. (156 aa)    
Predicted Functional Partners:
AHY47446.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
hisI
TIGRFAM:TIGR03188:Phosphoribosyl-ATP pyrophosphohydrolase; COG:COG0139: Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]; Pfam:PF01502:Phosphoribosyl-AMP cyclohydrolase domain; Hamap:MF_01020:Phosphoribosyl-ATP pyrophosphohydrolase; SUPERFAMILY:SSF141734:No Description;KEGG: 00340; UniPathway: UPA00031; histidine_hisI; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.736
AHY45753.1
TIGRFAM:TIGR00121:Biotin--acetyl-CoA-carboxylase ligase; COG:COG0340: Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]; Pfam:PF03099:Biotin/lipoate A/B protein ligase; SUPERFAMILY:SSF55681:No Description;KEGG: 00780; birA_ligase.
  
    0.717
moaA
moaA: molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
   
    0.641
tdk
COG:COG1435: Thymidine kinase [Nucleotide transport and metabolism]; Pfam:PF00265:Thymidine kinase; Hamap:MF_00124:Thymidine kinase, subgroup; Pfam:PF00265:Thymidine kinase; PIRSF:PIRSF035805:Thymidine kinase; ProSitePatterns:PS00603:Thymidine kinase, conserved site; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
    
 0.551
AHY47448.1
Pfam:PF07885:Ion transport 2; SUPERFAMILY:SSF81324:No Description.
  
    0.528
AHY47445.1
Pfam:PF07556:Protein of unknown function DUF1538.
     
 0.516
AHY47444.1
COG:COG0347: Nitrogen regulatory protein PII [Amino acid transport and metabolism]; ProSiteProfiles:PS51343:Nitrogen regulatory protein PII; SMART:SM00938:Nitrogen regulatory protein PII; SUPERFAMILY:SSF54913:Nitrogen regulatory PII-like, alpha/beta.
       0.504
AHY47525.1
TIGRFAM:TIGR02644:Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic; COG:COG0213: Thymidine phosphorylase [Nucleotide transport and metabolism]; Pfam:PF00591:Glycosyl transferase, family 3; PIRSF:PIRSF000478:Pyrimidine-nucleoside phosphorylase; ProSitePatterns:PS00647:Pyrimidine-nucleoside phosphorylase, conserved site; SMART:SM00941:Pyrimidine nucleoside phosphorylase, C-terminal; SUPERFAMILY:SSF52418:Glycosyl transferase, family 3;KEGG: 00240; KEGG: 00983; UniPathway: UPA00578; Y_phosphoryl.
     
  0.499
guaA
GMP synthase (glutamine-hydrolyzing), C-terminal domain; Catalyzes the synthesis of GMP from XMP.
  
  
 0.474
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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