STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47452.1Hemolysin-type calcium-binding repeat (2 copies); Pfam:PF00353:Haemolysin-type calcium-binding repeat; PRINTS:PR00313:NodO calcium binding signature; SUPERFAMILY:SSF51120:Serralysin-like metalloprotease, C-terminal. (230 aa)    
Predicted Functional Partners:
AHY45898.1
Tannase and feruloyl esterase; COG:COG2931: RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF07519:Tannase/feruloyl esterase; PRINTS:PR00313:NodO calcium binding signature; ProSitePatterns:PS00330:Hemolysin-type calcium-binding conserved site; SUPERFAMILY:SSF51120:Serralysin-like metalloprotease, C-terminal.
  
    0.606
AHY45342.1
Pfam:PF13517:Family description; SUPERFAMILY:SSF69318:No Description.
 
 
 0.572
AHY45609.1
TIGRFAM:TIGR04214:CSLREA domain; Pfam:PF00353:Haemolysin-type calcium-binding repeat; PRINTS:PR00313:NodO calcium binding signature; ProSitePatterns:PS00330:Hemolysin-type calcium-binding conserved site; SUPERFAMILY:SSF51126:Pectin lyase fold/virulence factor; CSLREA_Nterm.
 
 
0.525
AHY46311.1
COG:COG2406: Protein distantly related to bacterial ferritins [General function prediction only]; Pfam:PF00210:Ferritin/DPS protein domain; Pfam:PF00210:Ferritin/DPS protein domain; SUPERFAMILY:SSF47240:Ferritin-like superfamily; Belongs to the Dps family.
  
     0.509
AHY47453.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF110849:ParB-like nuclease.
  
    0.488
AHY47451.1
COG:COG2129: Predicted phosphoesterases related to the Icc protein [General function prediction only]; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; SUPERFAMILY:SSF56300:No Description.
       0.484
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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