STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47466.1Cupin domain; COG:COG1917: Uncharacterized conserved protein contains double-stranded beta-helix domain [Function unknown]; Pfam:PF07883:Cupin 2, conserved barrel; SUPERFAMILY:SSF51182:RmlC-like cupin domain. (114 aa)    
Predicted Functional Partners:
AHY47465.1
NADH(P)-binding; COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF13460:NADH(P)-binding; SUPERFAMILY:SSF51735:No Description.
  
    0.720
AHY46142.1
Prepilin-type N-terminal cleavage/methylation domain; TIGRFAM:TIGR02532:Prokaryotic N-terminal methylation site; COG:COG4970: Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF07963:Prokaryotic N-terminal methylation site; ProSitePatterns:PS00409:Prokaryotic N-terminal methylation site; SUPERFAMILY:SSF54523:No Description; IV_pilin_GFxxxE.
  
     0.652
AHY47467.1
COG:COG3546: Mn-containing catalase [Inorganic ion transport and metabolism]; Pfam:PF05067:Manganese catalase; Pfam:PF05067:Manganese catalase; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
 
     0.595
AHY45994.1
FAD binding domain; COG:COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]; Pfam:PF01494:Monooxygenase, FAD-binding; PRINTS:PR00420:Aromatic-ring hydroxylase-like; SUPERFAMILY:SSF51905:No Description.
 
  
 0.542
AHY47646.1
COG:COG0654: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]; Pfam:PF01494:Monooxygenase, FAD-binding; Pfam:PF01494:Monooxygenase, FAD-binding; PRINTS:PR00420:Aromatic-ring hydroxylase-like; SUPERFAMILY:SSF51905:No Description.
 
  
 0.521
AHY45432.1
FAD binding domain; COG:COG0644: Dehydrogenases (flavoproteins) [Energy production and conversion]; Pfam:PF01494:Monooxygenase, FAD-binding; PRINTS:PR00420:Aromatic-ring hydroxylase-like; SUPERFAMILY:SSF51905:No Description.
 
  
 0.494
AHY46385.1
Acetyltransferase (GNAT) family; COG:COG1246: N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]; Pfam:PF00583:GNAT domain; ProSiteProfiles:PS51186:GNAT domain; SUPERFAMILY:SSF55729:Acyl-CoA N-acyltransferase.
  
     0.454
AHY47272.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
     0.446
AHY45745.1
COG:COG1514: 2'-5' RNA ligase [Translation ribosomal structure and biogenesis]; Pfam:PF13563:2'-5' RNA ligase superfamily; SUPERFAMILY:SSF55144:RNA ligase/cyclic nucleotide phosphodiesterase.
  
     0.443
AHY47006.1
COG:COG2244: Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Pfam:PF01943:Polysaccharide biosynthesis protein; Pfam:PF01943:Polysaccharide biosynthesis protein.
  
     0.441
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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