STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47474.1COG:COG2149: Predicted membrane protein [Function unknown]; Pfam:PF02656:Domain of unknown function DUF202; Pfam:PF02656:Domain of unknown function DUF202. (123 aa)    
Predicted Functional Partners:
AHY47473.1
COG:COG2149: Predicted membrane protein [Function unknown]; Pfam:PF02656:Domain of unknown function DUF202.
      
0.773
AHY47472.1
COG:COG1070: Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]; Pfam:PF00370:Carbohydrate kinase, FGGY, N-terminal; Pfam:PF00370:Carbohydrate kinase, FGGY, N-terminal; ProSitePatterns:PS00445:Carbohydrate kinase, FGGY, conserved site; SUPERFAMILY:SSF53067:No Description; Belongs to the FGGY kinase family.
       0.551
AHY47475.1
TIGRFAM:TIGR00722:Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; COG:COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain [Energy production and conversion]; Pfam:PF05681:Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; ttdA_fumA_fumB.
       0.530
AHY47476.1
TIGRFAM:TIGR00723:Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; COG:COG1838: Tartrate dehydratase beta subunit/Fumarate hydratase class I C-terminal domain [Energy production and conversion]; Pfam:PF05683:Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; SUPERFAMILY:SSF117457:Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; ttdB_fumA_fumB.
       0.530
AHY46200.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
 
     0.425
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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