STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47495.1COG:COG0668: Small-conductance mechanosensitive channel [Cell envelope biogenesis outer membrane]; Pfam:PF00924:Mechanosensitive ion channel MscS; SUPERFAMILY:SSF50182:Like-Sm (LSM) domain. (284 aa)    
Predicted Functional Partners:
AHY47497.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.690
AHY47496.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.689
AHY47494.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.576
AHY47492.1
COG:COG0484: DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification protein turnover chaperones]; Pfam:PF00226:DnaJ domain; PRINTS:PR00625:DnaJ domain; ProSiteProfiles:PS50076:DnaJ domain; SMART:SM00271:DnaJ domain; SUPERFAMILY:SSF46565:DnaJ domain.
       0.420
AHY47493.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.420
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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