STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msrBTIGRFAM:TIGR00357:Peptide methionine sulphoxide reductase MrsB; COG:COG0229: Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification protein turnover chaperones]; Pfam:PF01641:Peptide methionine sulphoxide reductase MrsB; Hamap:MF_01400:Peptide methionine sulphoxide reductase MrsB; SUPERFAMILY:SSF51316:Mss4-like; Belongs to the MsrB Met sulfoxide reductase family. (140 aa)    
Predicted Functional Partners:
msrA
msrA: peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
 0.995
AHY46897.1
COG:COG1832: Predicted CoA-binding protein [General function prediction only]; Pfam:PF13380:CoA-binding; Pfam:PF13380:CoA-binding; SMART:SM00881:CoA-binding; SUPERFAMILY:SSF51735:No Description.
 
      0.738
AHY47501.1
COG:COG2110: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]; Pfam:PF01661:Appr-1-p processing; Pfam:PF01661:Appr-1-p processing; ProSiteProfiles:PS51154:Appr-1-p processing; SMART:SM00506:Appr-1-p processing; SUPERFAMILY:SSF52949:No Description.
       0.641
AHY47502.1
TIGRFAM:TIGR00221:N-acetylglucosamine-6-phosphate deacetylase; COG:COG1820: N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]; Pfam:PF13147:Amidohydrolase; PIRSF:PIRSF038994:N-acetylglucosamine-6-phosphate deacetylase; SUPERFAMILY:SSF51556:No Description;KEGG: 00052; KEGG: 00520; MetaCyc: PWY-6517.
       0.641
AHY47503.1
COG:COG2270: Permeases of the major facilitator superfamily [General function prediction only]; Pfam:PF11700:Autophagy-related protein 22-like; Pfam:PF11700:Autophagy-related protein 22-like; ProSiteProfiles:PS50850:Major facilitator superfamily domain; SUPERFAMILY:SSF103473:Major facilitator superfamily domain, general substrate transporter.
       0.641
AHY47352.1
COG:COG2816: NTP pyrophosphohydrolases containing a Zn-finger probably nucleic-acid-binding [DNA replication recombination and repair]; Pfam:PF00293:NUDIX hydrolase domain; Pfam:PF00293:NUDIX hydrolase domain; ProSitePatterns:PS00893:NUDIX hydrolase, conserved site; ProSiteProfiles:PS51462:NUDIX hydrolase domain; SUPERFAMILY:SSF55811:NUDIX hydrolase domain-like.
 
      0.601
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.561
AHY47499.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.535
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
 
 0.498
rpmG
TIGRFAM:TIGR01023:Ribosomal protein L33; COG:COG0267: Ribosomal protein L33 [Translation ribosomal structure and biogenesis]; Pfam:PF00471:Ribosomal protein L33; Hamap:MF_00294:Ribosomal protein L33; SUPERFAMILY:SSF57829:Ribosomal protein, zinc-binding domain; rpmG_bact; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.492
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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