STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47503.1COG:COG2270: Permeases of the major facilitator superfamily [General function prediction only]; Pfam:PF11700:Autophagy-related protein 22-like; Pfam:PF11700:Autophagy-related protein 22-like; ProSiteProfiles:PS50850:Major facilitator superfamily domain; SUPERFAMILY:SSF103473:Major facilitator superfamily domain, general substrate transporter. (456 aa)    
Predicted Functional Partners:
AHY47501.1
COG:COG2110: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]; Pfam:PF01661:Appr-1-p processing; Pfam:PF01661:Appr-1-p processing; ProSiteProfiles:PS51154:Appr-1-p processing; SMART:SM00506:Appr-1-p processing; SUPERFAMILY:SSF52949:No Description.
       0.773
AHY47502.1
TIGRFAM:TIGR00221:N-acetylglucosamine-6-phosphate deacetylase; COG:COG1820: N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]; Pfam:PF13147:Amidohydrolase; PIRSF:PIRSF038994:N-acetylglucosamine-6-phosphate deacetylase; SUPERFAMILY:SSF51556:No Description;KEGG: 00052; KEGG: 00520; MetaCyc: PWY-6517.
       0.773
msrB
TIGRFAM:TIGR00357:Peptide methionine sulphoxide reductase MrsB; COG:COG0229: Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification protein turnover chaperones]; Pfam:PF01641:Peptide methionine sulphoxide reductase MrsB; Hamap:MF_01400:Peptide methionine sulphoxide reductase MrsB; SUPERFAMILY:SSF51316:Mss4-like; Belongs to the MsrB Met sulfoxide reductase family.
       0.641
AHY47504.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; PRINTS:PR01852:Streptococcal non-M secreted SibA.
       0.535
AHY47499.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.442
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.