STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47511.1COG:COG1048: Aconitase A [Energy production and conversion]; Pfam:PF00330:Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Pfam:PF00330:Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; PRINTS:PR00415:Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SUPERFAMILY:SSF53732:Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha. (941 aa)    
Predicted Functional Partners:
AHY46900.1
TIGRFAM:TIGR01798:Citrate synthase, type II; COG:COG0372: Citrate synthase [Energy production and conversion]; Pfam:PF00285:Citrate synthase-like; PIRSF:PIRSF001369:Citrate synthase, bacterial-type; PRINTS:PR00143:Citrate synthase-like; ProSitePatterns:PS00480:Citrate synthase active site; SUPERFAMILY:SSF48256:Citrate synthase-like, core;KEGG: 00020; KEGG: 00630; MetaCyc: PWY-5750; UniPathway: UPA00223; cit_synth_I; Belongs to the citrate synthase family.
 
 0.995
AHY46554.1
COG:COG0473: Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]; Pfam:PF00180:Isopropylmalate dehydrogenase-like domain; Pfam:PF00180:Isopropylmalate dehydrogenase-like domain; ProSitePatterns:PS00470:Isocitrate/isopropylmalate dehydrogenase, conserved site; SUPERFAMILY:SSF53659:No Description.
 
 0.947
AHY47141.1
COG:COG0473: Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]; Pfam:PF00180:Isopropylmalate dehydrogenase-like domain; Pfam:PF00180:Isopropylmalate dehydrogenase-like domain; SUPERFAMILY:SSF53659:No Description.
  
 0.936
AHY47137.1
TIGRFAM:TIGR01346:Isocitrate lyase; COG:COG2224: Isocitrate lyase [Energy production and conversion]; Pfam:PF00463:Isocitrate lyase/phosphorylmutase; PIRSF:PIRSF001362:Isocitrate lyase; ProSitePatterns:PS00161:Isocitrate lyase/phosphorylmutase, conserved site; SUPERFAMILY:SSF51621:Pyruvate/Phosphoenolpyruvate kinase-like domain;KEGG: 00630; UniPathway: UPA00703; isocit_lyase.
   
 
 0.924
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.863
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.834
rpmB
TIGRFAM:TIGR00009:Ribosomal protein L28; COG:COG0227: Ribosomal protein L28 [Translation ribosomal structure and biogenesis]; Pfam:PF00830:Ribosomal protein L28; Hamap:MF_00373:Ribosomal protein L28; SUPERFAMILY:SSF143800:No Description; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.817
rpmJ
TIGRFAM:TIGR01022:Ribosomal protein L36; COG:COG0257: Ribosomal protein L36 [Translation ribosomal structure and biogenesis]; Pfam:PF00444:Ribosomal protein L36; Hamap:MF_00251:Ribosomal protein L36; ProSitePatterns:PS00828:Ribosomal protein L36; SUPERFAMILY:SSF57840:Ribosomal protein L36; rpmJ_bact; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.813
rpsF
S6: ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.812
rpmF
TIGRFAM:TIGR01031:Ribosomal protein L32p; COG:COG0333: Ribosomal protein L32 [Translation ribosomal structure and biogenesis]; Pfam:PF01783:Ribosomal protein L32p; Hamap:MF_00340:Ribosomal protein L32p; SUPERFAMILY:SSF57829:Ribosomal protein, zinc-binding domain; rpmF_bact; Belongs to the bacterial ribosomal protein bL32 family.
   
   0.808
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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