STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47512.1COG:COG4221: Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]; Pfam:PF00106:Short-chain dehydrogenase/reductase SDR; Pfam:PF00106:Short-chain dehydrogenase/reductase SDR; PIRSF:PIRSF000126:Short-chain dehydrogenase/reductase SDR; PRINTS:PR00081:Glucose/ribitol dehydrogenase; SMART:SM00822:Polyketide synthase/Fatty acid synthase, KR; SUPERFAMILY:SSF51735:No Description; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (254 aa)    
Predicted Functional Partners:
AHY45894.1
TIGRFAM:TIGR01746:Thioester reductase domain; COG:COG3320: Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00012:Phosphopantetheine attachment site; ProSiteProfiles:PS50075:Acyl carrier protein-like; SMART:SM00823:Polyketide synthase, phosphopantetheine-binding domain; SUPERFAMILY:SSF56801:No Description.
 
  
 0.925
AHY47513.1
COG:COG2311: Predicted membrane protein [Function unknown]; Pfam:PF04235:Domain of unknown function DUF418; Pfam:PF04235:Domain of unknown function DUF418.
       0.596
AHY47514.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.499
AHY47192.1
COG:COG4122: Predicted O-methyltransferase [General function prediction only]; Pfam:PF01596:O-methyltransferase, family 3; Pfam:PF01596:O-methyltransferase, family 3; SUPERFAMILY:SSF53335:No Description.
 
      0.462
AHY47511.1
COG:COG1048: Aconitase A [Energy production and conversion]; Pfam:PF00330:Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Pfam:PF00330:Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; PRINTS:PR00415:Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; SUPERFAMILY:SSF53732:Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha.
       0.444
AHY47515.1
Pfam:PF07690:Major facilitator superfamily; ProSiteProfiles:PS50850:Major facilitator superfamily domain; SUPERFAMILY:SSF103473:Major facilitator superfamily domain, general substrate transporter.
       0.421
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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