STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47517.1Bacterial regulatory protein, tetR family; COG:COG1309: Transcriptional regulator [Transcription]; Pfam:PF00440:DNA-binding HTH domain, TetR-type; PRINTS:PR00455:DNA-binding HTH domain, TetR-type; ProSiteProfiles:PS50977:DNA-binding HTH domain, TetR-type; SUPERFAMILY:SSF46689:Homeodomain-like. (208 aa)    
Predicted Functional Partners:
AHY47516.1
COG:COG2076: Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]; Pfam:PF00893:Small multidrug resistance protein family; Pfam:PF00893:Small multidrug resistance protein family; SUPERFAMILY:SSF103481:No Description.
  
  
 0.552
pdxY
Pyridoxal kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.
       0.512
AHY47513.1
COG:COG2311: Predicted membrane protein [Function unknown]; Pfam:PF04235:Domain of unknown function DUF418; Pfam:PF04235:Domain of unknown function DUF418.
 
     0.498
AHY47519.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.411
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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