STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47524.1CsbD-like; Pfam:PF05532:CsbD-like; SUPERFAMILY:SSF69047:CsbD-like; Belongs to the UPF0337 (CsbD) family. (60 aa)    
Predicted Functional Partners:
AHY47525.1
TIGRFAM:TIGR02644:Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic; COG:COG0213: Thymidine phosphorylase [Nucleotide transport and metabolism]; Pfam:PF00591:Glycosyl transferase, family 3; PIRSF:PIRSF000478:Pyrimidine-nucleoside phosphorylase; ProSitePatterns:PS00647:Pyrimidine-nucleoside phosphorylase, conserved site; SMART:SM00941:Pyrimidine nucleoside phosphorylase, C-terminal; SUPERFAMILY:SSF52418:Glycosyl transferase, family 3;KEGG: 00240; KEGG: 00983; UniPathway: UPA00578; Y_phosphoryl.
       0.512
deoB
deoB: phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
       0.506
AHY47522.1
COG:COG1972: Nucleoside permease [Nucleotide transport and metabolism]; Pfam:PF07662:Na dependent nucleoside transporter, C-terminal; Pfam:PF07662:Na dependent nucleoside transporter, C-terminal.
       0.444
AHY47526.1
COG:COG0813: Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]; Pfam:PF01048:Nucleoside phosphorylase domain; Pfam:PF01048:Nucleoside phosphorylase domain; ProSitePatterns:PS01232:Nucleoside phosphorylase, conserved site; SUPERFAMILY:SSF53167:No Description.
       0.435
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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