STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47534.1Hypothetical protein; COG:COG0398: Uncharacterized conserved protein [Function unknown]; Pfam:PF09335:SNARE associated Golgi protein; Pfam:PF09335:SNARE associated Golgi protein. (253 aa)    
Predicted Functional Partners:
AHY47321.1
COG:COG4134: ABC-type uncharacterized transport system periplasmic component [General function prediction only]; Pfam:PF13416:Bacterial extracellular solute-binding protein; Pfam:PF13416:Bacterial extracellular solute-binding protein; PIRSF:PIRSF029172:Protein ynjB; SUPERFAMILY:SSF53850:No Description.
 
  
 0.723
AHY47535.1
COG:COG2301: Citrate lyase beta subunit [Carbohydrate transport and metabolism]; Pfam:PF03328:Aldehyde-lyase domain; Pfam:PF03328:Aldehyde-lyase domain; PIRSF:PIRSF015582:Citrate lyase, beta subunit; SUPERFAMILY:SSF51621:Pyruvate/Phosphoenolpyruvate kinase-like domain; Belongs to the HpcH/HpaI aldolase family.
       0.658
tdk
COG:COG1435: Thymidine kinase [Nucleotide transport and metabolism]; Pfam:PF00265:Thymidine kinase; Hamap:MF_00124:Thymidine kinase, subgroup; Pfam:PF00265:Thymidine kinase; PIRSF:PIRSF035805:Thymidine kinase; ProSitePatterns:PS00603:Thymidine kinase, conserved site; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.639
AHY47320.1
COG:COG1176: ABC-type spermidine/putrescine transport system permease component I [Amino acid transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
 
     0.632
AHY47319.1
COG:COG1177: ABC-type spermidine/putrescine transport system permease component II [Amino acid transport and metabolism]; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; Pfam:PF00528:Binding-protein-dependent transport systems inner membrane component; ProSiteProfiles:PS50928:Binding-protein-dependent transport systems inner membrane component; SUPERFAMILY:SSF161098:No Description.
 
     0.586
AHY47318.1
COG:COG0558: Phosphatidylglycerophosphate synthase [Lipid metabolism]; Pfam:PF01066:CDP-alcohol phosphatidyltransferase; Pfam:PF01066:CDP-alcohol phosphatidyltransferase; ProSitePatterns:PS00379:CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.553
AHY47536.1
Pfam:PF09656:Uncharacterised protein family PGPGW, transmembrane.
       0.444
AHY47537.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.405
AHY47538.1
COG:COG1725: Predicted transcriptional regulators [Transcription]; Pfam:PF00392:Transcription regulator HTH, GntR; Pfam:PF00392:Transcription regulator HTH, GntR; ProSiteProfiles:PS50949:Transcription regulator HTH, GntR; SMART:SM00345:Transcription regulator HTH, GntR; SUPERFAMILY:SSF46785:No Description.
       0.405
AHY47539.1
COG:COG1131: ABC-type multidrug transport system ATPase component [Defense mechanisms]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.405
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.