STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47536.1Pfam:PF09656:Uncharacterised protein family PGPGW, transmembrane. (138 aa)    
Predicted Functional Partners:
AHY47537.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.693
AHY47538.1
COG:COG1725: Predicted transcriptional regulators [Transcription]; Pfam:PF00392:Transcription regulator HTH, GntR; Pfam:PF00392:Transcription regulator HTH, GntR; ProSiteProfiles:PS50949:Transcription regulator HTH, GntR; SMART:SM00345:Transcription regulator HTH, GntR; SUPERFAMILY:SSF46785:No Description.
       0.693
AHY47539.1
COG:COG1131: ABC-type multidrug transport system ATPase component [Defense mechanisms]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.693
AHY47540.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.693
AHY47535.1
COG:COG2301: Citrate lyase beta subunit [Carbohydrate transport and metabolism]; Pfam:PF03328:Aldehyde-lyase domain; Pfam:PF03328:Aldehyde-lyase domain; PIRSF:PIRSF015582:Citrate lyase, beta subunit; SUPERFAMILY:SSF51621:Pyruvate/Phosphoenolpyruvate kinase-like domain; Belongs to the HpcH/HpaI aldolase family.
       0.512
AHY47534.1
Hypothetical protein; COG:COG0398: Uncharacterized conserved protein [Function unknown]; Pfam:PF09335:SNARE associated Golgi protein; Pfam:PF09335:SNARE associated Golgi protein.
       0.444
AHY47541.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.402
AHY47542.1
Alpha/beta hydrolase family; COG:COG0596: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Pfam:PF12697:Alpha/beta hydrolase family; SUPERFAMILY:SSF53474:No Description.
       0.402
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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