STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY47565.1Putative restriction endonuclease; COG:COG4636: Uncharacterized protein conserved in cyanobacteria [Function unknown]; Pfam:PF05685:Domain of unknown function DUF820; SUPERFAMILY:SSF52980:Restriction endonuclease type II-like. (183 aa)    
Predicted Functional Partners:
AHY46194.1
Putative restriction endonuclease; COG:COG4636: Uncharacterized protein conserved in cyanobacteria [Function unknown]; Pfam:PF05685:Domain of unknown function DUF820; SUPERFAMILY:SSF52980:Restriction endonuclease type II-like.
  
     0.748
AHY47674.1
COG:COG4636: Uncharacterized protein conserved in cyanobacteria [Function unknown]; Pfam:PF05685:Domain of unknown function DUF820; Pfam:PF05685:Domain of unknown function DUF820; SUPERFAMILY:SSF52980:Restriction endonuclease type II-like.
  
     0.681
AHY47564.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.598
fumC
Fumarase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.590
AHY47567.1
COG:COG4293: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF08819:Protein of unknown function DUF1802; Pfam:PF08819:Protein of unknown function DUF1802; PIRSF:PIRSF018957:Uncharacterised conserved protein UCP018957.
 
     0.499
AHY47568.1
TPR repeat; COG:COG5010: Flp pilus assembly protein TadD contains TPR repeats [Intracellular trafficking and secretion]; Pfam:PF13414:TPR repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
       0.435
AHY47569.1
TPR repeat; COG:COG4785: Lipoprotein NlpI contains TPR repeats [General function prediction only]; Pfam:PF13414:TPR repeat; ProSiteProfiles:PS50293:Tetratricopeptide repeat-containing domain; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
       0.435
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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